Don't push sge file separatly.

sge/create-db.sh

@@ -5,8 +5,6 @@ HOST=${1:-sharc.shef.ac.uk}
 BASEDIR=$( cd $(dirname "$0"); cd ..; pwd -P )
 TARGETDIR='/data/$USER/create-db-'$(date +%Y%m%d-%H%M%S)
 
-SGEFILE="$BASEDIR/sge/create-db.sge"
-
 echo "Creating dirs ..."
 ssh "$HOST" mkdir -p $TARGETDIR/ExtensionCrawler
 ssh "$HOST" mkdir -p $TARGETDIR/logs
@@ -15,9 +13,6 @@ ssh "$HOST" mkdir -p $TARGETDIR/out
 echo "Pushing $BASEDIR to $HOST:$TARGETDIR/ExtensionCrawler ..."
 rsync -zr "$BASEDIR/" $HOST:"$TARGETDIR/ExtensionCrawler"
 
-echo "Pushing $SGEFILE to $HOST:$TARGETDIR/create-db.sge ..."
-rsync -zr "$SGEFILE" $HOST:"$TARGETDIR/create-db.sge"
-
 echo "Starting job ..."
 LAST_SNAPSHOT=$(ssh "$HOST" find /shared/brucker_research1/Shared/BrowserExtensions/.snapshot -maxdepth 1 -name \"D*\" | sort -r | head -n1)
 
@@ -26,4 +21,4 @@ ssh "$HOST" qsub \
   -t 1-256 \
   -j yes \
   -o "$TARGETDIR/logs" \
-  "$TARGETDIR/create-db.sge"
+  "$TARGETDIR/ExtensionCrawler/sge/create-db.sge"

sge/grepper.sh

@@ -6,8 +6,6 @@ HOST=${2:-sharc.shef.ac.uk}
 BASEDIR=$( cd $(dirname "$0"); cd ..; pwd -P )
 TARGETDIR='/data/$USER/grepper-'$(date +%Y%m%d-%H%M%S)
 
-SGEFILE="$BASEDIR/sge/grepper.sge"
-
 echo "Creating dirs ..."
 ssh "$HOST" mkdir -p $TARGETDIR/ExtensionCrawler
 ssh "$HOST" mkdir -p $TARGETDIR/logs
@@ -16,13 +14,10 @@ ssh "$HOST" mkdir -p $TARGETDIR/out
 echo "Pushing $BASEDIR to $HOST:$TARGETDIR/ExtensionCrawler ..."
 rsync -zr "$BASEDIR/" $HOST:"$TARGETDIR/ExtensionCrawler"
 
-echo "Pushing $SGEFILE to $HOST:$TARGETDIR/grepper.sge ..."
-rsync -zr "$SGEFILE" $HOST:"$TARGETDIR/grepper.sge"
-
 echo "Starting job ..."
 ssh "$HOST" qsub \
   -v BASEDIR="$TARGETDIR",PATTERN="$PATTERN" \
   -t 1-256 \
   -j yes \
   -o "$TARGETDIR/logs" \
-  "$TARGETDIR/grepper.sge"
+  "$TARGETDIR/ExtensionCrawler/sge/grepper.sge"