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d8d2e41dc6
Author | SHA1 | Date |
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Achim D. Brucker | d8d2e41dc6 | |
Achim D. Brucker | b1a23da67d |
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@ -44,7 +44,7 @@ clean_jobdir(){
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split_input(){
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echo "Splitting input."
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split -d -a 8 -e -n l/$jobs "$input" "$workdir/input/"
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split --numeric-suffixes=1 -a 8 -e -n l/$jobs "$input" "$workdir/input/"
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}
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mk_hpc_script(){
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@ -68,12 +68,14 @@ mk_hpc_script(){
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#$ -j yes
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#$ -o "$prefix"/"$name"/output
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export JOBINPUT="$prefix"/"$name"/input/\`printf %08d \$SGE_TASK_ID\`
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set -o nounset
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set -o errexit
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set -x
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/usr/bin/time -v $wrapper "$prefix"/"$name"/"bin"/$cmd
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export JOBINPUT="$prefix"/"$name"/input/\`printf %08d \$SGE_TASK_ID\`
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/usr/bin/time -v $wrapper $prefix/$name/bin/$cmd
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echo "Execution successful."
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EOF
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}
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@ -112,7 +114,7 @@ workdir=`mktemp -d`
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echo $workdir
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## default values
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prefix="~/hpc/"
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prefix="\$HOME/hpc"
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jobs=1
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name="$host-$USER-$timestamp"
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input=""
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