#!/bin/bash
set -o nounset

SING_EXEC="singularity exec --pwd /opt/ExtensionCrawler -B $TMPDIR:/tmp $SING_IMG"

printenv
echo "The following parameter were passed: $*"
echo "Printing the content of $ARCHIVE to force mounting:"
ls "$ARCHIVE"

/usr/bin/time $SING_EXEC ./grepper -t 1 -a "$ARCHIVE" -n $SGE_TASK_ID -N $MAX_SGE_TASK_ID $* | bzip2 > "$BASEDIR/out/$SGE_TASK_ID.bz2"