ExtensionCrawler/sge/grepper.sge

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#!/bin/bash
module -s load apps/python/conda 2> /dev/null
source activate mypython35
set -o nounset
printenv
"$BASEDIR/ExtensionCrawler/grepper" -a "$ARCHIVE" -n $SGE_TASK_ID -N $MAX_SGE_TASK_ID "$PATTERN" | bzip2 > "$BASEDIR/out/$SGE_TASK_ID.bz2"