2017-08-23 17:04:33 +00:00
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#!/bin/bash
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set -o nounset
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2017-09-21 19:09:00 +00:00
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set -x
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2017-08-23 17:04:33 +00:00
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2017-09-20 10:37:57 +00:00
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SING_EXEC="singularity exec --pwd /opt/ExtensionCrawler -B $TMPDIR:/tmp $SING_IMG"
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2017-08-23 22:23:21 +00:00
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2017-09-20 10:37:57 +00:00
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printenv
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2017-09-02 16:52:51 +00:00
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echo "The following parameter were passed: $*"
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2017-09-20 10:37:57 +00:00
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echo "Printing the content of $ARCHIVE to force mounting:"
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ls "$ARCHIVE"
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2017-09-02 16:52:51 +00:00
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2017-09-21 19:09:00 +00:00
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if [ -f "$BASEDIR/ids" ]; then
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EXT_SELECT="-e $BASEDIR/ids"
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else
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EXT_SELECT=
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fi
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/usr/bin/time $SING_EXEC ./create-db -t 1 -a "$ARCHIVE" -n $SGE_TASK_ID -N $MAX_SGE_TASK_ID $EXT_SELECT $*
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