ExtensionCrawler/sge/create-db.sge

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442 B
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Executable File

#!/bin/bash
set -o nounset
set -x
SING_EXEC="singularity exec --pwd /opt/ExtensionCrawler -B $TMPDIR:/tmp $SING_IMG"
printenv
echo "The following parameter were passed: $*"
echo "Printing the content of $ARCHIVE to force mounting:"
ls "$ARCHIVE"
if [ -f "$BASEDIR/ids" ]; then
EXT_SELECT="-e $BASEDIR/ids"
else
EXT_SELECT=
fi
/usr/bin/time $SING_EXEC ./create-db -t 1 -a "$ARCHIVE" -n $SGE_TASK_ID -N $MAX_SGE_TASK_ID $EXT_SELECT $*