Michael Herzberg
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26e5067042
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Added option to handle more than one extension per sharc job.
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2019-05-15 21:59:59 +01:00 |
 Achim D. Brucker
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c230e7ef96
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Cleanup.
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2019-02-27 22:16:23 +00:00 |
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Michael Herzberg
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e492f516ac
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Restrict sharc jobs to 1 hour.
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2018-08-02 16:13:25 +01:00 |
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Michael Herzberg
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85a5645763
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Ignore GPU nodes, use less RAM.
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2018-07-26 18:38:11 +02:00 |
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Michael Herzberg
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67b7a46543
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Add support for provided extension ids.
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2018-07-21 02:15:18 +01:00 |
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Michael Herzberg
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651506bd0c
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Sort db inserts to prevent deadlocks.
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2018-06-13 09:33:55 +01:00 |
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Michael Herzberg
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4d32497ad7
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Force ExtensionCrawler.img overwrite.
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2018-05-15 00:50:10 +01:00 |
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Achim D. Brucker
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9ddddc50c4
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Initial commit.
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2017-10-10 20:32:30 +01:00 |
 Michael Herzberg
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980f143859
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Changed name of singularity image file.
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2017-10-04 23:17:06 +01:00 |
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Michael Herzberg
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3b6eda8dff
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Fixed missing backslash.
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2017-09-22 13:09:15 +01:00 |
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Michael Herzberg
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97f752881b
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Added extension id file support and increased memory for create-db job to 4G.
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2017-09-21 20:09:00 +01:00 |
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Michael Herzberg
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99ded090d4
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Add time to sge scripts.
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2017-09-20 17:13:52 +01:00 |
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Michael Herzberg
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8955661e43
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Also use singularity for grepper scripts.
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2017-09-20 15:19:30 +01:00 |
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Michael Herzberg
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50446b7fb2
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Added missing variable
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2017-09-20 11:58:56 +01:00 |
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Michael Herzberg
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543c8d7fc8
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Added singularity image for create-db.
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2017-09-20 11:37:57 +01:00 |
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Michael Herzberg
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9a356630ba
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cd into basedir before executing sharc job.
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2017-09-19 17:13:59 +01:00 |
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Michael Herzberg
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1814b1738a
|
Added email notifications on abort.
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2017-09-15 21:32:12 +01:00 |
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Michael Herzberg
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e09cb16083
|
Updated path to archive.
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2017-09-10 12:20:23 +01:00 |
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Michael Herzberg
|
66adacccad
|
Adjusted parameters in grepper sge script.
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2017-09-07 12:44:08 +01:00 |
|
Michael Herzberg
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45496a0d5d
|
Log parameters.
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2017-09-02 17:52:51 +01:00 |
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Michael Herzberg
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d7dcfdbcbd
|
Use $* instead of $@.
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2017-09-02 17:50:16 +01:00 |
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Michael Herzberg
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54475b97a8
|
Added arg option to sge script.
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2017-09-02 17:45:12 +01:00 |
|
Michael Herzberg
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c33e8204ea
|
Cleaned up create-db sge script a bit.
|
2017-09-02 17:05:42 +01:00 |
|
Michael Herzberg
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b024f5b6d5
|
Don't zip log files.
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2017-08-30 16:04:02 +01:00 |
|
Michael Herzberg
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c7e36cec81
|
Exclude archive dir when pushing to sharc.
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2017-08-30 10:11:25 +01:00 |
|
Michael Herzberg
|
405ab32ffd
|
zip log files
|
2017-08-30 10:09:15 +01:00 |
|
Michael Herzberg
|
35ec26e001
|
Flush guarded output immediatly and remove parallelism for sharc jobs :(.
|
2017-08-28 11:56:34 +01:00 |
|
Michael Herzberg
|
a81c53f9ca
|
Improved sge script.
|
2017-08-24 08:56:02 +01:00 |
|
Michael Herzberg
|
9950984e27
|
Improved sge script.
|
2017-08-24 08:35:22 +01:00 |
|
Michael Herzberg
|
d4e94bcbb8
|
Fixed sge scripts.
|
2017-08-23 23:23:21 +01:00 |
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Michael Herzberg
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d2288e9a03
|
Don't push sge file separatly.
|
2017-08-23 18:10:31 +01:00 |
|
Michael Herzberg
|
3d896c104d
|
Also improved create-db script.
|
2017-08-23 18:04:33 +01:00 |
|
Michael Herzberg
|
93daae78a6
|
Move logs and out to separate dirs.
|
2017-08-23 17:01:05 +01:00 |
|
Michael Herzberg
|
83c653dad9
|
Added bzip to grepper.
|
2017-08-23 16:57:31 +01:00 |
|
Michael Herzberg
|
a6ee53d35b
|
Improved grepper.
|
2017-08-23 16:52:18 +01:00 |
|
Michael Herzberg
|
6de7eb4368
|
Fixed grepper sge.
|
2017-08-14 15:15:50 +01:00 |
|
Michael Herzberg
|
9f6cfc22a3
|
Added create-db sge wrapper.
|
2017-07-31 20:30:35 +01:00 |
|
Michael Herzberg
|
82a41aef18
|
Added python wrapper for grepper sge stuff.
|
2017-07-31 20:18:34 +01:00 |