Achim D. Brucker
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9ddddc50c4
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Initial commit.
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2017-10-10 20:32:30 +01:00 |
Michael Herzberg
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980f143859
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Changed name of singularity image file.
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2017-10-04 23:17:06 +01:00 |
Michael Herzberg
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3b6eda8dff
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Fixed missing backslash.
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2017-09-22 13:09:15 +01:00 |
Michael Herzberg
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97f752881b
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Added extension id file support and increased memory for create-db job to 4G.
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2017-09-21 20:09:00 +01:00 |
Michael Herzberg
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99ded090d4
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Add time to sge scripts.
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2017-09-20 17:13:52 +01:00 |
Michael Herzberg
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8955661e43
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Also use singularity for grepper scripts.
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2017-09-20 15:19:30 +01:00 |
Michael Herzberg
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50446b7fb2
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Added missing variable
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2017-09-20 11:58:56 +01:00 |
Michael Herzberg
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543c8d7fc8
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Added singularity image for create-db.
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2017-09-20 11:37:57 +01:00 |
Michael Herzberg
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9a356630ba
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cd into basedir before executing sharc job.
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2017-09-19 17:13:59 +01:00 |
Michael Herzberg
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1814b1738a
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Added email notifications on abort.
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2017-09-15 21:32:12 +01:00 |
Michael Herzberg
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e09cb16083
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Updated path to archive.
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2017-09-10 12:20:23 +01:00 |
Michael Herzberg
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66adacccad
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Adjusted parameters in grepper sge script.
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2017-09-07 12:44:08 +01:00 |
Michael Herzberg
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45496a0d5d
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Log parameters.
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2017-09-02 17:52:51 +01:00 |
Michael Herzberg
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d7dcfdbcbd
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Use $* instead of $@.
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2017-09-02 17:50:16 +01:00 |
Michael Herzberg
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54475b97a8
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Added arg option to sge script.
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2017-09-02 17:45:12 +01:00 |
Michael Herzberg
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c33e8204ea
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Cleaned up create-db sge script a bit.
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2017-09-02 17:05:42 +01:00 |
Michael Herzberg
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b024f5b6d5
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Don't zip log files.
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2017-08-30 16:04:02 +01:00 |
Michael Herzberg
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c7e36cec81
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Exclude archive dir when pushing to sharc.
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2017-08-30 10:11:25 +01:00 |
Michael Herzberg
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405ab32ffd
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zip log files
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2017-08-30 10:09:15 +01:00 |
Michael Herzberg
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35ec26e001
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Flush guarded output immediatly and remove parallelism for sharc jobs :(.
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2017-08-28 11:56:34 +01:00 |
Michael Herzberg
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a81c53f9ca
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Improved sge script.
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2017-08-24 08:56:02 +01:00 |
Michael Herzberg
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9950984e27
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Improved sge script.
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2017-08-24 08:35:22 +01:00 |
Michael Herzberg
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d4e94bcbb8
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Fixed sge scripts.
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2017-08-23 23:23:21 +01:00 |
Michael Herzberg
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d2288e9a03
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Don't push sge file separatly.
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2017-08-23 18:10:31 +01:00 |
Michael Herzberg
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3d896c104d
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Also improved create-db script.
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2017-08-23 18:04:33 +01:00 |
Michael Herzberg
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93daae78a6
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Move logs and out to separate dirs.
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2017-08-23 17:01:05 +01:00 |
Michael Herzberg
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83c653dad9
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Added bzip to grepper.
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2017-08-23 16:57:31 +01:00 |
Michael Herzberg
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a6ee53d35b
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Improved grepper.
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2017-08-23 16:52:18 +01:00 |
Michael Herzberg
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6de7eb4368
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Fixed grepper sge.
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2017-08-14 15:15:50 +01:00 |
Michael Herzberg
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9f6cfc22a3
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Added create-db sge wrapper.
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2017-07-31 20:30:35 +01:00 |
Michael Herzberg
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82a41aef18
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Added python wrapper for grepper sge stuff.
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2017-07-31 20:18:34 +01:00 |