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Burkhart Wolff 2022-01-30 14:50:22 +01:00
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examples/scholarly_paper/2021-ITP-PMTI/paper.thy
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@ -197,7 +197,8 @@ ITP community allowing a deeper structuring of mathematical libraries such as th
declare_reference*[casestudy::text_section]
(*>*)
section*[bgrnd::text_section,main_author="Some(@{docitem ''adb''}::author)"] \<open> Background\<close>
section*[bgrnd::background,main_author="Some(@{docitem ''bu''}::author)"] \<open> Background\<close>
(*
subsection\<open>Isabelle/DOF Design and Implementation\<close>
text\<open>
In this section, we provide a guided tour through the underlying technologies of this paper:
@ -215,32 +216,25 @@ text\<open>
The plugin Isabelle/HOL offers a modeling language similar to functional programming languages
extended by a logic and automated proof and animation techniques.
\<close>
subsection*[bgrnd_isadof::text_section]\<open>The \<^dof> Framework\<close>
*)
subsection*[bgrnd_isadof::background]\<open>The \<^dof> Framework\<close>
text\<open>
\<^dof> ~@{cite "brucker.ea:isabelle-ontologies:2018" and
"brucker.ea:isabelledof:2019"}
is a document ontology framework that extends Isabelle/HOL. We understand
by a \<^emph>\<open>document ontology\<close> structured meta-data attached to an integrated document allowing
classifying text-elements, connect them to typed meta-data, and establishing typed links between text-
and formal elements (such as definitions, proofs, code, test-results, etc).
is a document ontology framework that extends Isabelle/HOL.
\<^dof> offers basically two things: a language called ODL to \<^emph>\<open>specify\<close> a formal ontology,
and ways to \<^emph>\<open>annotate\<close> an integrated document written in Isabelle/HOL with the specified
meta-data. Additionally, \<^dof> generates from an ontology a family of semantic macros---called
\<^emph>\<open>antiquotations\<close> that may appear in text or code---allowing establishing
machine-checked links between classified entities. Not unlike the UML/OCL meta-model, ODL offers class
invariants as well as means to express
structural constraints in documents.
Unlike UML, however, \<^dof> allows for integrated documents with informal and formal elements
including the necessary management of logical contexts.
meta-data. Additionally, \<^dof> generates from an ontology a family of
\<^emph>\<open>antiquotations\<close> allowing to establish machine-checked links between classified entities.
% Unlike UML, however, \<^dof> allows for integrated documents with informal and formal elements
% including the necessary management of logical contexts.
The perhaps most attractive aspect of \<^dof> is its deep integration into the IDE of Isabelle
(PIDE), which allows hypertext-like navigation as well as fast user-feedback
during development and evolution of the integrated document. This includes rich editing support,
(PIDE), which allows a hypertext-like navigation as well as fast user-feedback
during development and evolution of the integrated source. This includes rich editing support,
including on-the-fly semantics checks, hinting, or auto-completion.
\<^dof> supports \<^LaTeX> - based document generation as well as ontology-aware ``views'' on
the integrated document, \ie, specific versions of generated PDF addressing,
the integrated document, \<^ie>, specific versions of generated PDF addressing,
for example, different stake-holders.
\<close>
@ -248,7 +242,7 @@ text\<open>
figure*[isadof_screenshot::figure, relative_width="100", src="''figures/cicm2018-combined''"]\<open>
The \<^dof> IDE (left) and the corresponding PDF(right).
\<close>
text*[description_scrrenshot::text_section]\<open>
text*[description_scrrenshot::background]\<open>
@{docitem \<open>isadof_screenshot\<close>} shows \<^dof> in action: the left-hand side shows the IDE of
\<^dof> in the context of a user session maintaining our case study
(see @{docitem (unchecked) "casestudy"})
@ -257,7 +251,7 @@ text*[description_scrrenshot::text_section]\<open>
\<close>
(*>*)
subsection*[bgrnd_ODL::text_section]\<open>A Guided Tour through ODL\<close>
subsection*[bgrnd_ODL::background]\<open>A Guided Tour through ODL\<close>
text\<open>
\<^dof> provides a strongly typed Ontology Definition Language (ODL) that provides the usual
concepts of ontologies such as
@ -300,6 +294,8 @@ text\<open>\autoref{text-elements} shows an ontological annotation of a requirem
it suffices to click on its keyword: the IDE will display the class-definition and its surrounding
documentation in the ontology.\<close>
(*
text\<open>\<^dof>'s generated antiquotations are part of a general mechanism of
Isabelle's standard antiquotations heavily used in various papers and technical reports.
For example, in the following informal text, the antiquotation \<^verbatim>\<open>thm refl\<close> refers
@ -323,15 +319,18 @@ text\<open>\<^dof>'s generated antiquotations are part of a general mechanism of
generated glossaries or lists of concepts.
\<close>
*)
subsection\<open>Meta-Objects as Extensible Records\<close>
text\<open>Explain record notation.\<close>
subsection\<open>Code-Generation in Isabelle\<close>
text\<open>Explain eval and nbe, and refer to references.\<close>
section\<open>Invariants in DOF\<close>
section*[invariants::technical,main_author="Some(@{docitem ''nic''}::author)"]
\<open>Term-Context support and Invariants in DOF\<close>
text\<open>
A novel mechanism to specify invariants is implemented
@ -410,10 +409,9 @@ datatype kind = expert_opinion | argument | "proof"
when the instance \<^emph>\<open>testinv2\<close> is defined.
\<close>
subsection\<open>Example and Queries\<close>
section\<open>Proving Morphisms on Ontologies\<close>
section\<open>Example and Queries\<close>
section*["morphisms"::technical,main_author="Some(@{docitem ''idir''}::author)"] \<open>Proving Morphisms on Ontologies\<close>
text\<open>
A new mechanism to make query on instances is available and uses the HOL implementation of Lists.
@ -448,8 +446,34 @@ subsection\<open>Engineering Example : An Extract from PLib\<close>
subsection\<open>Mathematics Example : An Extract from OntoMathPro\<close>
section\<open>Conclusion\<close>
subsection\<open>Related Works\<close>
section*[concl::conclusion]\<open>Conclusion\<close>
subsection*[rw::related_work]\<open>Related Works\<close>
text\<open>
\<^item> Geschwalle: Tom Gruber's "Ontology for Engineering Mathematics"
\<^url>\<open>https://tomgruber.org/writing/an-ontology-for-engineering-mathematics\<close>
\<^item> OntoMathPro contains indeed something like a "taxonomy of the fields of mathematics" pp 110
\<^url>\<open>https://kpfu.ru/staff_files/F_438204284/OntoMathPro_ontology_KESW2014.pdf\<close>
According to In total, OntoMathPRO contains 3,449 classes ...
\<^item> Translated from the Russian Federal Standard for Higher Education on mathematics
for master students, Section 5.2:
\<^url>\<open>http://www.edu.ru/db-mon/mo/Data/d_10/prm40-1.pdf\<close>
\<^item> Elements of OntoMathPro :
(* figures/OntoMathPro-Taxonomy.png
figures/OntoMathPro-Taxonomy-2.png *)
\<^item> Other Onto: DBpedia @{cite "10.1007/978-3-540-76298-0_52"}
SPARQL endpoint: \<^url>\<open>http://dbpedia.org/sparql\<close>
\<^item> Other Onto: ScienceWISE
\<^url>\<open>http://data.sciencewise.info/openrdf-sesame/repositories/SW\<close>
\<^url>\<open>https://github.com/CLLKazan/OntoMathPro\<close>
\<^item> Search Engines: Wikipedia Formula Search, \<^url>\<open>http://shinh.org/wfs\<close>
\<^item> And then: The stuff from Univ Erlangen (Kohlhase et al).
\<close>
subsubsection\<open>The notion of \<^emph>\<open>Integrated Source\<close>\<close>
text\<open>Links to the term: Integrated Document
\<^item> \<^url>\<open>https://www.openkm.com/blog/integrated-document-management.html\<close>
@ -485,34 +509,8 @@ https://doi.org/10.1145/2479787.2479830
*)
section\<open> Related work \<close>
text\<open>
\<^item> Geschwalle: Tom Gruber's "Ontology for Engineering Mathematics"
\<^url>\<open>https://tomgruber.org/writing/an-ontology-for-engineering-mathematics\<close>
\<^item> OntoMathPro contains indeed something like a "taxonomy of the fields of mathematics" pp 110
\<^url>\<open>https://kpfu.ru/staff_files/F_438204284/OntoMathPro_ontology_KESW2014.pdf\<close>
According to In total, OntoMathPRO contains 3,449 classes ...
\<^item> Translated from the Russian Federal Standard for Higher Education on mathematics
for master students, Section 5.2:
\<^url>\<open>http://www.edu.ru/db-mon/mo/Data/d_10/prm40-1.pdf\<close>
\<^item> Elements of OntoMathPro :
(* figures/OntoMathPro-Taxonomy.png
figures/OntoMathPro-Taxonomy-2.png *)
\<^item> Other Onto: DBpedia @{cite "10.1007/978-3-540-76298-0_52"}
SPARQL endpoint: \<^url>\<open>http://dbpedia.org/sparql\<close>
\<^item> Other Onto: ScienceWISE
\<^url>\<open>http://data.sciencewise.info/openrdf-sesame/repositories/SW\<close>
\<^url>\<open>https://github.com/CLLKazan/OntoMathPro\<close>
\<^item> Search Engines: Wikipedia Formula Search, \<^url>\<open>http://shinh.org/wfs\<close>
\<^item> And then: The stuff from Univ Erlangen (Kohlhase et al).
\<close>
text\<open>\pagebreak\<close>
section\<open>Annex\<close>
subsection\<open>Remotely relevant stuff\<close>