2019-08-10 19:07:52 +00:00
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# [Isabelle/DOF](https://git.logicalhacking.com/Isabelle_DOF/Isabelle_DOF): Document Preparation Setup
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2018-02-07 17:43:15 +00:00
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2019-08-11 21:26:43 +00:00
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Isabelle/DOF is a novel Document Ontology Framework on top of Isabelle.
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Isabelle/DOF allows for both conventional typesetting as well as formal
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2019-12-06 13:29:25 +00:00
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development. The manual for [Isabelle/DOF 1.0.0/Isabelle2019 is available
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online.](https://artifacts.logicalhacking.com/releases/Isabelle_DOF/Isabelle_DOF/Isabelle_DOF-1.0.0_Isabelle2019.pdf)
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2018-02-07 18:44:27 +00:00
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2019-08-18 13:05:00 +00:00
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## Running Isabelle/DOF using Docker
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As an alternative to installing Isabelle/DOF locally, the latest official release Isabelle/DOF
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is also available on Docker Hub. Thus, if you have Docker installed and your installation of
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Docker supports X11 application, you can start Isabelle/DOF as follows:
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```console
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foo@bar:~$ docker run -ti --rm -e DISPLAY=$DISPLAY -v /tmp/.X11-unix:/tmp/.X11-unix \
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logicalhacking/isabelle_dof-1.0.0_isabelle2019 isabelle jedit
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```
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## Pre-requisites
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Isabelle/DOF has two major pre-requisites:
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2020-04-20 17:54:22 +00:00
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* **Isabelle:** Isabelle/DOF requires [Isabelle 2020](http://isabelle.in.tum.de/website-Isabelle2020/).
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Please download the Isabelle 2020 distribution for your operating
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system from the [Isabelle website](http://isabelle.in.tum.de/website-Isabelle2020/).
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* **LaTeX:** Isabelle/DOF requires a modern pdfTeX-engine supporting the \expanded{}-primitive. This
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is, for example, included in the [TeXLive 2019](https://www.tug.org/texlive/) (or later)
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distribution. Please follow the [TeXLive installation instructions](https://www.tug.org/texlive/acquire-netinstall.html)
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for installing TeXLive.
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## Installation
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2018-06-12 22:28:20 +00:00
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In most case, the DOF-plugin can be installed as follows:
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```console
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foo@bar:~$ ./install
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```
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If a specific Isabelle version should be used (i.e., not the default
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one), the full path to the ``isabelle`` command needs to be passed as
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using the ``--isabelle`` command line argument of the ``install`` script:
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```console
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foo@bar:~$ ./install --isabelle /usr/local/Isabelle2020/bin/isabelle
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```
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For further command line options of the installer, please use the
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built-in help:
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```console
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foo@bar:~$ ./install --help
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```
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2019-08-17 09:39:42 +00:00
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A final step for the installation is:
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2019-08-17 09:39:42 +00:00
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```console
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foo@bar:~$ isabelle build -D .
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```
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This will compile Isabelle/DOF and run the example suite.
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2018-06-12 22:28:20 +00:00
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## Usage
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2019-01-06 18:43:23 +00:00
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### Opening an Example
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If you want to work with or extend one of the examples, e.g., you can
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open it similar to any standard Isabelle theory:
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```console
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isabelle jedit -d . -l Isabelle_DOF examples/scholarly_paper/2018_cicm/IsaDofApplications.thy
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```
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This will open an example of a scientific paper using the pre-compiled
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session ``Isabelle_DOF``, i.e., you will not be able to edit the
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ontology definitions. If you want to edit the ontology definition,
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just open the theory file with the default HOL session:
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```console
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isabelle jedit -d . -l HOL examples/scholarly_paper/2018_cicm/IsaDofApplications.thy
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```
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While this gives you more flexibility, it might "clutter" your editing
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experience, as a lot of internal theories are loaded into Isabelle's
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editor.
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### Creating a New Project
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The DOF-plugin provides an alternative to Isabelle's ``mkroot`` command.
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Isabelle projects that use DOF need to be created using
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```console
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foo@bar:~$ isabelle mkroot_DOF
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```
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The ``mkroot_DOF`` command takes the same parameter as the standard
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``mkroot`` command of Isabelle. Thereafter, the normal Isabelle
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command for building documents can be used.
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Using the ``-o`` option, different ontology setups can be
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selected and using the ``-t`` option, different LaTeX setups
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can be selected. For example,
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```console
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foo@bar:~$ isabelle mkroot_DOF -o scholarly_paper -t scrartcl
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```
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creates a setup using the scholarly_paper ontology and the article
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class from the KOMA-Script bundle.
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The help (option ``-h``) show a list of all supported ontologies and
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document templates:
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```console
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foo@bar:~$ isabelle mkroot_DOF -h
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Usage: isabelle mkroot_DOF [OPTIONS] [DIR]
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Options are:
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-h print this help text and exit
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-n NAME alternative session name (default: DIR base name)
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-o ONTOLOGY (default: scholarly_paper)
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Available ontologies:
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* cenelec_50128
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* mathex
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* scholarly_paper
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-t TEMPLATE (default: scrartcl)
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Available document templates:
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* lncs
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* scrartcl
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* scrreprt
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* scrreprt-modern
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Prepare session root DIR (default: current directory).
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```
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2019-08-18 13:05:00 +00:00
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## Releases
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For releases, signed archives including a PDF version of the Isabelle/DOF manual are
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are available:
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* Isabelle/DOF 1.0.0/Isabelle2019
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* [Isabelle_DOF-1.0.0_Isabelle2019.pdf](https://artifacts.logicalhacking.com/releases/Isabelle_DOF/Isabelle_DOF/Isabelle_DOF-1.0.0_Isabelle2019.pdf)
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* [Isabelle_DOF-1.0.0_Isabelle2019.tar.xz](https://artifacts.logicalhacking.com/releases/Isabelle_DOF/Isabelle_DOF/Isabelle_DOF-1.0.0_Isabelle2019.tar.xz)
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* [Isabelle_DOF-1.0.0_Isabelle2019.tar.xz.asc](https://artifacts.logicalhacking.com/releases/Isabelle_DOF/Isabelle_DOF/Isabelle_DOF-1.0.0_Isabelle2019.tar.xz.asc)
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2018-06-12 22:28:20 +00:00
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## Team
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Main contacts:
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2018-06-12 22:28:20 +00:00
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* [Achim D. Brucker](http://www.brucker.ch/)
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* [Burkhart Wolff](https://www.lri.fr/~wolff/)
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### Contributors
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* Idir Ait-Sadoune
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* Paolo Crisafulli
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* Chantal Keller
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## License
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This project is licensed under a 2-clause BSD license.
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SPDX-License-Identifier: BSD-2-Clause
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## Publications
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* Achim D. Brucker, Idir Ait-Sadoune, Paolo Crisafulli, and Burkhart
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Wolff. [Using The Isabelle Ontology Framework: Linking the Formal
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with the Informal](https://www.brucker.ch/bibliography/download/2018/brucker.ea-isabelle-ontologies-2018.pdf).
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In Conference on Intelligent Computer Mathematics (CICM). Lecture
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Notes in Computer Science (11006), Springer-Verlag, 2018.
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[doi:10.1007/978-3-319-96812-4_3](https://doi.org/10.1007/978-3-319-96812-4_3).
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* Achim D. Brucker and Burkhart Wolff. [Isabelle/DOF: Design and
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Implementation](https://www.brucker.ch/bibliography/download/2019/brucker.ea-isabelledof-2019.pdf).
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In Software Engineering and Formal Methods (SEFM). Lecture Notes in
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2019-08-17 15:40:22 +00:00
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Computer Science (11724), Springer-Verlag, 2019.
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[doi:10.1007/978-3-030-30446-1_15](https://doi.org/10.1007/978-3-030-30446-1_15).
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* Achim D. Brucker, Burkhart Wolff. [Using Ontologies in Formal Developments Targeting Certification]
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(https://www.brucker.ch/bibliography/download/2019/brucker.ea-ontologies-certification-2019.pdf). In
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Integrated Formal Methods (IFM). Lecture Notes in Computer Science (11918). Springer-Verlag 2019.
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[doi:10.1007/978-3-030-34968-4_4](http://dx.doi.org/10.1007/978-3-030-34968-4_4)
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2019-06-17 09:32:51 +00:00
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## Master Repository
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The master git repository for this project is hosted
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<https://git.logicalhacking.com/Isabelle_DOF/Isabelle_DOF>.
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